Transcript: MCHR2-AS1:5

Basic information

LNCipedia transcript ID: MCHR2-AS1:5 
LNCipedia gene ID: MCHR2-AS1
Location (hg19): chr6:100441844-100481140
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 720 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT114142
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0145 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MCHR2-AS1:5 yes no no no

Available literature

  1. Delacrétaz (2015), Influence of MCHR2 and MCHR2-AS1 Genetic Polymorphisms on Body Mass Index in Psychiatric Patients and In Population-Based Subjects with Present or Past Atypical Depression., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM13-3:8
4.0 MCHR2-AS1:5
4.1 MCHR2-AS1:5
5.0 MCHR2-AS1:5
5.1 MCHR2-AS1:5
5.2 MCHR2-AS1:5