Transcript: MEF2C-AS1:11

Basic information

LNCipedia transcript ID: MEF2C-AS1:11 
HGNC Gene Symbol: MEF2C-AS1    
HGNC Full Gene Name: MEF2C antisense RNA 1
Ensembl Gene ID: ENSG00000248309
Ensembl Transcript ID: ENST00000511876
Location (hg19): chr5:88185268-88201087
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 358 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511876; ENST00000511876.1; CTC-454M9.1-008; OTTHUMT00000370008.1; NONHSAT102698; ENST00000511876.5
Alternative gene names: ENSG00000248309; CTC-454M9.1; ENSG00000248309.1; OTTHUMG00000162630.2; MEF2C-AS1; ENSG00000248309.5; ; ENSG00000248309.6; ENSG00000248309.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.1949 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:11 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3G-5:8
3.1 lnc-RASA1-7:8
4.0 MEF2C-AS1:11
4.1 MEF2C-AS1:11
5.0 MEF2C-AS1:11
5.1 MEF2C-AS1:11
5.2 MEF2C-AS1:11