Transcript: MEF2C-AS1:31

Basic information

LNCipedia transcript ID: MEF2C-AS1:31 
HGNC Gene Symbol: MEF2C-AS1    
HGNC Full Gene Name: MEF2C antisense RNA 1
Ensembl Gene ID: ENSG00000248309
Ensembl Transcript ID: ENST00000514794
Location (hg19): chr5:88179216-88240810
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2350 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514794.6
Alternative gene names: ENSG00000248309.6; MEF2C-AS1; ; ENSG00000248309.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.5983 non-coding 
CPAT coding probability 6.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:31 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MEF2C-AS1:31
5.0 MEF2C-AS1:31
5.1 MEF2C-AS1:31
5.2 MEF2C-AS1:31