Transcript: MEF2C-AS1:47

Basic information

LNCipedia transcript ID: MEF2C-AS1:47 
LNCipedia gene ID: MEF2C-AS1
Location (hg19): chr5:88185267-88401763
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 351 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248309.1|HBMT00001144356.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.5983 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:47 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MEF2C-AS1:47
5.0 MEF2C-AS1:47
5.1 MEF2C-AS1:47
5.2 MEF2C-AS1:47