Transcript: MEF2C-AS1:54

Basic information

LNCipedia transcript ID: MEF2C-AS1:54 
LNCipedia gene ID: MEF2C-AS1
RefSeq ID: NR_136222
Location (hg19): chr5:88185125-88763398
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2300 bp
Exons: 8
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_136222.1
Alternative gene names: MEF2C-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.7194 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:54 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 MEF2C-AS1:54
5.1 MEF2C-AS1:54
5.2 MEF2C-AS1:54