Transcript: MEF2C-AS1:7

Basic information

LNCipedia transcript ID: MEF2C-AS1:7 
LNCipedia gene ID: MEF2C-AS1
RefSeq ID: NR_109940
Location (hg19): chr5:88185125-88237187
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 865 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109940; NR_109940.1
Alternative gene names: ; MEF2C-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.1676 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEF2C-AS1:7 yes no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASA1-7:17
4.0 MEF2C-AS1:7
4.1 MEF2C-AS1:7
5.0 MEF2C-AS1:7
5.1 MEF2C-AS1:7
5.2 MEF2C-AS1:7