Transcript: MEG9:4

Basic information

LNCipedia transcript ID: MEG9:4 
LNCipedia gene ID: MEG9
Location (hg19): chr14:101536824-101539271
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2403 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000444846; ENST00000444846.1; MEG9-003; OTTHUMT00000072602.1; NONHSAT040002
Alternative gene names: ENSG00000223403; AL132709.7; ENSG00000223403.2; MEG9; OTTHUMG00000029067.3; LINC00584


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.2939 non-coding 
CPAT coding probability 7.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEG9:4 no no no no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  2. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  3. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  4. Hagan (2009), At least ten genes define the imprinted Dlk1-Dio3 cluster on mouse chromosome 12qF1., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLK1-11:3
3.1 lnc-DLK1-11:3
4.0 MEG9:4
4.1 MEG9:4
5.0 MEG9:4
5.1 MEG9:4
5.2 MEG9:4