Transcript: MEG9:5

Basic information

LNCipedia transcript ID: MEG9:5 
HGNC Gene Symbol: MEG9    
HGNC Full Gene Name: maternally expressed 9
Ensembl Gene ID: ENSG00000223403
Ensembl Transcript ID: ENST00000452349
Location (hg19): chr14:101538144-101538895
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000452349; ENST00000452349.1; MEG9-002; OTTHUMT00000072601.1; NONHSAT040003
Alternative gene names: ENSG00000223403; AL132709.7; ENSG00000223403.2; MEG9; OTTHUMG00000029067.3; ENSG00000223403.3; LINC00584; ENSG00000223403.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEG9:5 no no no no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  2. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  3. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  4. Hagan (2009), At least ten genes define the imprinted Dlk1-Dio3 cluster on mouse chromosome 12qF1., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLK1-11:4
3.1 lnc-DLK1-11:4
4.0 MEG9:5
4.1 MEG9:5
5.0 MEG9:5
5.1 MEG9:5
5.2 MEG9:5