Transcript: MEG9:6

Basic information

LNCipedia transcript ID: MEG9:6 
HGNC Gene Symbol: MEG9    
HGNC Full Gene Name: maternally expressed 9
Ensembl Gene ID: ENSG00000223403
Ensembl Transcript ID: ENST00000554016
Location (hg19): chr14:101530488-101539274
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1456 bp
Exons: 7
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554016.2
Alternative gene names: ENSG00000223403.4; MEG9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.2939 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MEG9:6 no no no no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  2. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  3. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  4. Hagan (2009), At least ten genes define the imprinted Dlk1-Dio3 cluster on mouse chromosome 12qF1., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 MEG9:6
5.1 MEG9:6
5.2 MEG9:6