Transcript: MESTIT1:1

Basic information

LNCipedia transcript ID: MESTIT1:1 
LNCipedia gene ID: MESTIT1
RefSeq ID: NR_004382
Location (hg19): chr7:130126898-130131013
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3242 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501789; NONHSAT123349; NR_004382; NR_004382.1
Alternative gene names: ENSG00000246011; MESTIT1; NCRNA00040; MEST-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.64 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MESTIT1:1 no no no no

Available literature

  1. Nakabayashi (2002), Identification and characterization of an imprinted antisense RNA (MESTIT1) in the human MEST locus on chromosome 7q32., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COPG2-1:1
3.1 lnc-COPG2-1:1
4.0 MESTIT1:1
4.1 MESTIT1:1
5.0 MESTIT1:1
5.1 MESTIT1:1
5.2 MESTIT1:1