Transcript: MHENCR:24

Basic information

LNCipedia transcript ID: MHENCR:24 
HGNC Gene Symbol: MHENCR    
HGNC Full Gene Name: melanoma highly expressed competing endogenous lncRNA for miR-425 and miR-489
Ensembl Gene ID: ENSG00000232442
Ensembl Transcript ID: ENST00000411579
Location (hg19): chr20:62258603-62260060
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027985; ENST00000411579.1; CTD-3184A7.4-002; OTTHUMT00000080161.1
Alternative gene names: XLOC_013615; linc-RTEL1; ENSG00000232442.1; CTD-3184A7.4; OTTHUMG00000032983.1; MHENCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0916 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MHENCR:24 no no no no

Available literature

  1. Chen (2017), Long noncoding RNA MHENCR promotes melanoma progression via regulating miR-425/489-mediated PI3K-Akt pathway., Am J Transl Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTEL1.1-1:2
3.1 lnc-RTEL1.1-1:2
4.0 lnc-RTEL1.1-3:5
4.1 lnc-RTEL1.1-3:5
5.0 lnc-RTEL1.1-3:5
5.1 MHENCR:13
5.2 MHENCR:24