Transcript: MINCR:11

Basic information

LNCipedia transcript ID: MINCR:11 
HGNC Gene Symbol: MINCR    
HGNC Full Gene Name: MYC-induced long non-coding RNA
Ensembl Gene ID: ENSG00000253716
Ensembl Transcript ID: ENST00000524335
Location (hg19): chr8:144363240-144363835
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524335.1; RP13-582O9.5-004; OTTHUMT00000381239.1; NONHSAT129560
Alternative gene names: ENSG00000253716.1; RP13-582O9.5; OTTHUMG00000164976.1; ENSG00000253716.5; MINCR; TCONS_00015189


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.4949 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MINCR:11 no no no no

Available literature

  1. Doose (2015), MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOP1MT-2:4
4.0 MINCR:11
4.1 MINCR:11
5.0 MINCR:11
5.1 MINCR:11
5.2 MINCR:11