Transcript: MIR1-1HG-AS1:3

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:3 
LNCipedia gene ID: MIR1-1HG-AS1
RefSeq ID: NR_033263
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3610 bp
Exons: 0
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033263.1
Alternative gene names: C20orf166-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 22.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MIR1-1HG-AS1:3 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 MIR1-1HG-AS1:3
5.1 MIR1-1HG-AS1:3
5.2 MIR1-1HG-AS1:3