Transcript: MIR1-1HG-AS1:35

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:35 
LNCipedia gene ID: MIR1-1HG-AS1
Location (hg19): chr20:61141436-61148733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2577 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000174403.11|MICT00000221880.1
Alternative gene names: FLJ30313


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.9398 non-coding 
CPAT coding probability 26.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR1-1HG-AS1:35 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 C20orf166-AS1:16
5.0 C20orf166-AS1:16
5.1 MIR1-1HG-AS1:10
5.2 MIR1-1HG-AS1:35