Transcript: MIR1-1HG-AS1:49

Basic information

LNCipedia transcript ID: MIR1-1HG-AS1:49 
LNCipedia gene ID: MIR1-1HG-AS1
Location (hg19): chr20:61143310-61146748
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 958 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT080756
Alternative gene names: FLJ30313


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0856 non-coding 
CPAT coding probability 88.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MIR1-1HG-AS1:49 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GATA5-2:9
4.0 C20orf166-AS1:9
4.1 C20orf166-AS1:9
5.0 C20orf166-AS1:9
5.1 MIR1-1HG-AS1:24
5.2 MIR1-1HG-AS1:49