Transcript: MIR100HG:39

Basic information

LNCipedia transcript ID: MIR100HG:39 
LNCipedia gene ID: MIR100HG
Location (hg19): chr11:121899039-121908990
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020141; NONHSAT024762
Alternative gene names: XLOC_009582; linc-TRIM29-3; AGD1; lncRNA-N2; linc-NeD125


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.0245 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR100HG:39 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Emmrich (2014), LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia., Mol. Cancer
  3. Zhao (2010), Evaluation of BLID and LOC399959 as candidate genes for high myopia in the Chinese Han population., Mol. Vis.
  4. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BLID-2:6
3.1 lnc-BLID-1:21
4.0 MIR100HG:39
4.1 MIR100HG:39
5.0 MIR100HG:39
5.1 MIR100HG:39
5.2 MIR100HG:39