Transcript: MIR200CHG:9

Basic information

LNCipedia transcript ID: MIR200CHG:9 
LNCipedia gene ID: MIR200CHG
Location (hg19): chr12:7072358-7074514
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1305 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT026194
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.9602 non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR200CHG:9 yes no no no

Available literature

  1. Wang (2017), Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN6-1:2
4.0 lnc-PTPN6-1:2
4.1 lnc-PTPN6-1:2
5.0 lnc-PTPN6-1:2
5.1 MIR200CHG:2
5.2 MIR200CHG:9