Transcript: MIR217HG:1

Basic information

LNCipedia transcript ID: MIR217HG:1 
HGNC Gene Symbol: MIR217HG    
HGNC Full Gene Name: MIR217 host gene
Ensembl Gene ID: ENSG00000226702
Ensembl Transcript ID: ENST00000446139
Location (hg19): chr2:56190326-56274461
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 900 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446139; ENST00000446139.1; AC011306.2-001; OTTHUMT00000324929.1; NONHSAT070813
Alternative gene names: ENSG00000226702; AC011306.2; ENSG00000226702.1; OTTHUMG00000152029.1; MIR217HG; MIR216AHG; MIR216BHG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.6358 non-coding 
CPAT coding probability 6.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR217HG:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFEMP1-1:1
3.1 lnc-EFEMP1-1:1
4.0 MIR217HG:1
4.1 MIR217HG:1
5.0 MIR217HG:1
5.1 MIR217HG:1
5.2 MIR217HG:1