Transcript: MIR22HG:13

Basic information

LNCipedia transcript ID: MIR22HG:13 
LNCipedia gene ID: MIR22HG
Location (hg19): chr17:1614805-1619504
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1365 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000334146; ENST00000334146.3; MIR22HG-001; OTTHUMT00000255250.2
Alternative gene names: ENSG00000186594; C17orf91; ENSG00000186594.6; MIR22HG; OTTHUMG00000132197.4; ENSG00000186594.8; MGC14376; DKFZp686O06159


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -215.1609 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR22HG:13 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
  3. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  4. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TLCD2-1:1
3.1 lnc-TLCD2-1:10
4.0 MIR22HG:13
4.1 MIR22HG:13
5.0 MIR22HG:13
5.1 MIR22HG:13
5.2 MIR22HG:13