Transcript: MIR22HG:19

Basic information

LNCipedia transcript ID: MIR22HG:19 
HGNC Gene Symbol: MIR22HG    
HGNC Full Gene Name: MIR22 host gene
Ensembl Gene ID: ENSG00000186594
Ensembl Transcript ID: ENST00000609398
Location (hg19): chr17:1616008-1619504
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 584 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609398.1; ENST00000609398.5
Alternative gene names: ENSG00000186594.8; MIR22HG; ENSG00000186594.12; MGC14376; DKFZp686O06159; ENSG00000186594.13; ENSG00000186594.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.1815 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR22HG:19 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  2. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
  3. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  4. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLCD2-1:18
4.0 MIR22HG:19
4.1 MIR22HG:19
5.0 MIR22HG:19
5.1 MIR22HG:19
5.2 MIR22HG:19