Transcript: MIR29B2CHG:52

Basic information

LNCipedia transcript ID: MIR29B2CHG:52 
HGNC Gene Symbol: MIR29B2CHG    
HGNC Full Gene Name: MIR29B2 and MIR29C host gene
Ensembl Gene ID: ENSG00000203709
Ensembl Transcript ID: ENST00000435542
Location (hg19): chr1:208047140-208052418
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009156; ENST00000435542.2
Alternative gene names: ENSG00000226202.2; RP11-328D5.1; ENSG00000203709.10; C1orf132; ENSG00000203709.11; MIR29B2CHG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.6464 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR29B2CHG:52 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf132-2:3
4.0 lnc-C1orf132-2:3
4.1 lnc-C1orf132-1:12
5.0 lnc-C1orf132-1:12
5.1 MIR29B2CHG:5
5.2 MIR29B2CHG:52