Transcript: MIR3663HG:8

Basic information

LNCipedia transcript ID: MIR3663HG:8 
LNCipedia gene ID: MIR3663HG
Location (hg19): chr10:118905805-118928414
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00019033
Alternative gene names: XLOC_008959; linc-VAX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.0269 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3663HG:8 no no no no

Available literature

  1. Ma (2015), Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes., Nat. Methods


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAX1-1:6
3.1 lnc-VAX1-1:6
4.0 MIR3663HG:8
4.1 MIR3663HG:8
5.0 MIR3663HG:8
5.1 MIR3663HG:8
5.2 MIR3663HG:8