Transcript: MIR3936HG:10

Basic information

LNCipedia transcript ID: MIR3936HG:10 
HGNC Gene Symbol: MIR3936HG    
HGNC Full Gene Name: MIR3936 host gene
Ensembl Gene ID: ENSG00000233006
Ensembl Transcript ID: ENST00000616965
Location (hg19): :-
Strand:
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 607 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616965.1
Alternative gene names: ENSG00000233006.6; AC034220.3; MIR3936HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MIR3936HG:10 yes no no no

Available literature

  1. He (2016), Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 MIR3936HG:10
5.1 MIR3936HG:10
5.2 MIR3936HG:10