Transcript: MIR3936HG:20

Basic information

LNCipedia transcript ID: MIR3936HG:20 
HGNC Gene Symbol: MIR3936HG    
HGNC Full Gene Name: MIR3936 host gene
Ensembl Gene ID: ENSG00000233006
Ensembl Transcript ID: ENST00000453876
Location (hg19): chr5:131685126-131688243
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453876.1; AC034220.3-004; OTTHUMT00000315755.1; NONHSAT103741
Alternative gene names: ENSG00000233006.1; AC034220.3; OTTHUMG00000059646.2; ENSG00000233006.2; ENSG00000233006.6; MIR3936HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6975 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3936HG:20 no no no no

Available literature

  1. He (2016), Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-P4HA2-2:4
4.0 lnc-P4HA2-2:4
4.1 lnc-P4HA2-2:4
5.0 lnc-P4HA2-2:4
5.1 MIR3936HG:11
5.2 MIR3936HG:20