Transcript: MIR3936HG:22

Basic information

LNCipedia transcript ID: MIR3936HG:22 
LNCipedia gene ID: MIR3936HG
Location (hg19): chr5:131670527-131681573
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT103739
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.7461 non-coding 
CPAT coding probability 8.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3936HG:22 yes no no no

Available literature

  1. He (2016), Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-P4HA2-2:10
4.0 lnc-P4HA2-2:10
4.1 lnc-P4HA2-2:10
5.0 lnc-P4HA2-2:10
5.1 MIR3936HG:13
5.2 MIR3936HG:22