Transcript: MIR3945HG:2

Basic information

LNCipedia transcript ID: MIR3945HG:2 
HGNC Gene Symbol: MIR3945HG    
HGNC Full Gene Name: MIR3945 host gene
Ensembl Gene ID: ENSG00000251230
Ensembl Transcript ID: ENST00000510284
Location (hg19): chr4:185767432-185776836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007924; ENST00000510284; ENST00000510284.1; RP11-701P16.5-002; OTTHUMT00000361377.1; NONHSAT099570
Alternative gene names: XLOC_004208; linc-ACSL1-1; ENSG00000251230; RP11-701P16.5; ENSG00000251230.1; OTTHUMG00000160604.1; ENSG00000251230.5; MIR3945HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.9487 non-coding 
CPAT coding probability 16.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR3945HG:2 no no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACSL1-1:2
3.1 lnc-ACSL1-1:2
4.0 MIR3945HG:2
4.1 MIR3945HG:2
5.0 MIR3945HG:2
5.1 MIR3945HG:2
5.2 MIR3945HG:2