Transcript: MIR4435-2HG:19

Basic information

LNCipedia transcript ID: MIR4435-2HG:19 
LNCipedia gene ID: MIR4435-2HG
Location (hg19): chr2:112227095-112237838
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424617.1; AC068491.1-008; OTTHUMT00000332131.1; NONHSAT073651
Alternative gene names: ENSG00000172965.6; AC068491.1; OTTHUMG00000150313.6; LINC00978; AGD2; AK001796; lncRNA-AWPPH


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.5196 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4435-2HG:19 no no no no

Available literature

  1. Kotzin (2016), The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan., Nature
  2. Yang (2015), A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer., Toxicol. Appl. Pharmacol.
  3. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108463.1-3:12
4.0 MIR4435-2HG:19
4.1 MIR4435-2HG:19
5.0 MIR4435-2HG:19
5.1 MIR4435-2HG:19
5.2 MIR4435-2HG:19