Transcript: MIR4435-2HG:30

Basic information

LNCipedia transcript ID: MIR4435-2HG:30 
LNCipedia gene ID: MIR4435-2HG
Ensembl Gene ID: ENSG00000271590
Ensembl Transcript ID: ENST00000603748
Location (hg19): chr2:111968572-111970053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1482 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT073626; ENST00000603748.1
Alternative gene names: ENSG00000271590.1; RP11-181E10.3; LINC00978; AGD2; AK001796; lncRNA-AWPPH; AC108463.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.6767 non-coding 
CPAT coding probability 19.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4435-2HG:30 no no no no

Available literature

  1. Kotzin (2016), The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan., Nature
  2. Yang (2015), A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer., Toxicol. Appl. Pharmacol.
  3. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108463.1-3:28
4.0 MIR4435-2HG:30
4.1 MIR4435-2HG:30
5.0 MIR4435-2HG:30
5.1 MIR4435-2HG:30
5.2 MIR4435-2HG:30