Transcript: MIR4435-2HG:31

Basic information

LNCipedia transcript ID: MIR4435-2HG:31 
LNCipedia gene ID: MIR4435-2HG
Location (hg19): chr2:111903361-111969134
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 510 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002thf_2
Alternative gene names: LINC00978; AGD2; AK001796; lncRNA-AWPPH


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.6353 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR4435-2HG:31 no no no no

Available literature

  1. Kotzin (2016), The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan., Nature
  2. Yang (2015), A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer., Toxicol. Appl. Pharmacol.
  3. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC108463.1-3:29
4.0 MIR4435-2HG:31
4.1 MIR4435-2HG:31
5.0 MIR4435-2HG:31
5.1 MIR4435-2HG:31
5.2 MIR4435-2HG:31