Transcript: MIR583HG:39

Basic information

LNCipedia transcript ID: MIR583HG:39 
HGNC Gene Symbol: MIR583HG    
HGNC Full Gene Name: MIR583 host gene
Ensembl Gene ID: ENSG00000250551
Ensembl Transcript ID: ENST00000507997
Location (hg19): chr5:95385819-95551223
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 704 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507997; ENST00000507997.1; RP11-254I22.1-001; OTTHUMT00000370578.1; NONHSAT102882
Alternative gene names: ENSG00000250551; RP11-254I22.1; ENSG00000250551.1; OTTHUMG00000162825.1; MIR583HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -278.5308 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR583HG:39 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf27-2:1
3.1 lnc-C5orf27-3:1
4.0 lnc-C5orf27-3:1
4.1 lnc-CAST-4:17
5.0 lnc-CAST-4:17
5.1 MIR583HG:16
5.2 MIR583HG:39