Transcript: MIR583HG:48

Basic information

LNCipedia transcript ID: MIR583HG:48 
LNCipedia gene ID: MIR583HG
Ensembl Gene ID: ENSG00000251314
Ensembl Transcript ID: ENST00000513158
Location (hg19): chr5:95920197-95966704
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513158.1; CTD-2337A12.1-003; OTTHUMT00000370535.1; NONHSAT102895
Alternative gene names: ENSG00000251314.1; CTD-2337A12.1; OTTHUMG00000162821.1; ENSG00000251314.2; AC104123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.0018 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR583HG:48 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAST-4:3
4.0 lnc-CAST-4:3
4.1 lnc-CAST-4:3
5.0 lnc-CAST-4:3
5.1 MIR583HG:27
5.2 MIR583HG:48