Transcript: MIR646HG:20

Basic information

LNCipedia transcript ID: MIR646HG:20 
HGNC Gene Symbol: MIR646HG    
HGNC Full Gene Name: MIR646 host gene
Ensembl Gene ID: ENSG00000228340
Ensembl Transcript ID: ENST00000427820
Location (hg19): chr20:58755946-58825060
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427820; ENST00000427820.1; RP5-1043L13.1-011; OTTHUMT00000079957.1; NONHSAT080651
Alternative gene names: ENSG00000228340; RP5-1043L13.1; ENSG00000228340.1; OTTHUMG00000032883.1; ENSG00000228340.5; MIR646HG;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.4817 non-coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR646HG:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf197-1:11
3.1 lnc-C20orf197-3:11
4.0 MIR646HG:20
4.1 MIR646HG:20
5.0 MIR646HG:20
5.1 MIR646HG:20
5.2 MIR646HG:20