Transcript: MIR646HG:22

Basic information

LNCipedia transcript ID: MIR646HG:22 
LNCipedia gene ID: MIR646HG
Location (hg19): chr20:58896460-58899668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028249; NONHSAT080657
Alternative gene names: XLOC_013591; linc-CDH4-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.3164 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR646HG:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf197-1:13
3.1 lnc-C20orf197-3:13
4.0 MIR646HG:22
4.1 MIR646HG:22
5.0 MIR646HG:22
5.1 MIR646HG:22
5.2 MIR646HG:22