Transcript: MIR646HG:3

Basic information

LNCipedia transcript ID: MIR646HG:3 
LNCipedia gene ID: MIR646HG
RefSeq ID: NR_109917
Location (hg19): chr20:58662741-58676442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 923 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109917; NR_109917.1
Alternative gene names: ; LOC729296


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.5264 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR646HG:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf197-3:16
4.0 MIR646HG:3
4.1 MIR646HG:3
5.0 MIR646HG:3
5.1 MIR646HG:3
5.2 MIR646HG:3