Transcript: MIR7-3HG:7

Basic information

LNCipedia transcript ID: MIR7-3HG:7 
LNCipedia gene ID: MIR7-3HG
Location (hg19): chr19:4769173-4769915
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT060645
Alternative gene names: PGSF1; PGSF1a; PGSF1b; Huh7; uc002mbe.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.4899 non-coding 
CPAT coding probability 12.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR7-3HG:7 no no no no

Available literature

  1. Yang (2013), Induction of the liver cancer-down-regulated long noncoding RNA uc002mbe.2 mediates trichostatin-induced apoptosis of liver cancer cells., Biochem. Pharmacol.
  2. Tanaka (2002), Expression profile of active genes in the human pituitary gland., J. Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FEM1A-1:7
4.0 MIR7-3HG:7
4.1 MIR7-3HG:7
5.0 MIR7-3HG:7
5.1 MIR7-3HG:7
5.2 MIR7-3HG:7