Transcript: MIR9-3HG:14

Basic information

LNCipedia transcript ID: MIR9-3HG:14 
LNCipedia gene ID: MIR9-3HG
RefSeq ID: NR_015411
Location (hg19): chr15:89921273-89941718
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4198 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000538734; TCONS_00023192; NONHSAT048295; NR_015411; NR_015411.1
Alternative gene names: ENSG00000255571; XLOC_011345; linc-C15orf42-2; AC133637.1; ; MIR9-3HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.3199 non-coding 
CPAT coding probability 2.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:14 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FANCI-1:5
3.1 lnc-FANCI-2:9
4.0 MIR9-3HG:14
4.1 MIR9-3HG:14
5.0 MIR9-3HG:14
5.1 MIR9-3HG:14
5.2 MIR9-3HG:14