Transcript: MIR9-3HG:7

Basic information

LNCipedia transcript ID: MIR9-3HG:7 
LNCipedia gene ID: MIR9-3HG
RefSeq ID: NR_133003
Location (hg19): chr15:89911330-89941718
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4113 bp
Exons: 7
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT048287; NR_133003.1
Alternative gene names: ; MIR9-3HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.3199 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR9-3HG:7 no no no no

Available literature

  1. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  2. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCI-2:23
4.0 MIR9-3HG:7
4.1 MIR9-3HG:7
5.0 MIR9-3HG:7
5.1 MIR9-3HG:7
5.2 MIR9-3HG:7