Transcript: MIR99AHG:26

Basic information

LNCipedia transcript ID: MIR99AHG:26 
LNCipedia gene ID: MIR99AHG
Location (hg19): chr21:17791999-17979404
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 264 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000418813; ENST00000418813.1; LINC00478-010; OTTHUMT00000158038.1; NONHSAT081242
Alternative gene names: ENSG00000215386; C21orf34; ENSG00000215386.5; LINC00478; OTTHUMG00000074377.1; MONC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIR99AHG:26 no no no no

Available literature

  1. Bailey (2015), Loss of estrogen-regulated microRNA expression increases HER2 signaling and is prognostic of poor outcome in luminal breast cancer., Cancer Res.
  2. Caudron-Herger (2015), Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories., Nucleic Acids Res.
  3. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  4. Emmrich (2014), LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia., Mol. Cancer
  5. Gardiner (2002), Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP25-2:10
3.1 lnc-USP25-2:10
4.0 MIR99AHG:26
4.1 MIR99AHG:26
5.0 MIR99AHG:26
5.1 MIR99AHG:26
5.2 MIR99AHG:26