Transcript: MIRLET7DHG:5

Basic information

LNCipedia transcript ID: MIRLET7DHG:5 
LNCipedia gene ID: MIRLET7DHG
Location (hg19): chr9:96938884-96966818
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1287 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000416309; ENST00000416309.1; MIRLET7DHG-001; OTTHUMT00000053172.2
Alternative gene names: ENSG00000230262; RP11-2B6.1; ENSG00000230262.1; MIRLET7DHG; OTTHUMG00000020259.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.6346 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MIRLET7DHG:5 no no no no

Available literature

  1. Rodriguez (2004), Identification of mammalian microRNA host genes and transcription units., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM22F-1:1
3.1 lnc-FAM22F-1:1
4.0 MIRLET7DHG:5
4.1 MIRLET7DHG:5
5.0 MIRLET7DHG:5
5.1 MIRLET7DHG:5
5.2 MIRLET7DHG:5