Transcript: MMP25-AS1:19

Basic information

LNCipedia transcript ID: MMP25-AS1:19 
LNCipedia gene ID: MMP25-AS1
Location (hg19): chr16:3103355-3108194
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1771 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT147931
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 76.1244 coding 
CPAT coding probability 14.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP25-AS1:19 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC64B-1:20
4.0 MMP25-AS1:19
4.1 MMP25-AS1:19
5.0 MMP25-AS1:19
5.1 MMP25-AS1:19
5.2 MMP25-AS1:19