Transcript: MNX1-AS1:1

Basic information

LNCipedia transcript ID: MNX1-AS1:1 
HGNC Gene Symbol: MNX1-AS1    
HGNC Full Gene Name: MNX1 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000243479
Ensembl Transcript ID: ENST00000480284
Location (hg19): chr7:156803499-156809120
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1041 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000480284.1; RP5-1121A15.1-001; OTTHUMT00000347788.1; NONHSAT124453
Alternative gene names: ENSG00000243479.3; RP5-1121A15.1; OTTHUMG00000157179.1; MNX1-AS1; ; CCAT5; LOC645249


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.4926 non-coding 
CPAT coding probability 15.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MNX1-AS1:1 no no no no

Available literature

  1. Lv (2017), Long Noncoding RNA MNX1-AS1 Knockdown Inhibits Cell Proliferation and Migration in Ovarian Cancer., Cancer Biother. Radiopharm.
  2. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene
  3. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOM1-5:1
4.0 MNX1-AS1:1
4.1 MNX1-AS1:1
5.0 MNX1-AS1:1
5.1 MNX1-AS1:1
5.2 MNX1-AS1:1