Transcript: MNX1-AS1:3

Basic information

LNCipedia transcript ID: MNX1-AS1:3 
LNCipedia gene ID: MNX1-AS1
RefSeq ID: NR_038835
Location (hg19): chr7:156803551-156809118
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038835; NR_038835.1
Alternative gene names: ; CCAT5; LOC645249; MNX1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.4926 non-coding 
CPAT coding probability 15.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MNX1-AS1:3 no no no no

Available literature

  1. Lv (2017), Long Noncoding RNA MNX1-AS1 Knockdown Inhibits Cell Proliferation and Migration in Ovarian Cancer., Cancer Biother. Radiopharm.
  2. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene
  3. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOM1-5:3
4.0 MNX1-AS1:3
4.1 MNX1-AS1:3
5.0 MNX1-AS1:3
5.1 MNX1-AS1:3
5.2 MNX1-AS1:3