Transcript: MNX1-AS1:6

Basic information

LNCipedia transcript ID: MNX1-AS1:6 
LNCipedia gene ID: MNX1-AS1
Location (hg19): chr7:156803531-156846466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6240 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000243479.3|MICT00000336993.1
Alternative gene names: CCAT5; LOC645249


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.8783 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MNX1-AS1:6 no no no no

Available literature

  1. Lv (2017), Long Noncoding RNA MNX1-AS1 Knockdown Inhibits Cell Proliferation and Migration in Ovarian Cancer., Cancer Biother. Radiopharm.
  2. Matsumura (2017), The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration., Oncogene
  3. Kim (2015), Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MNX1-AS1:6
5.0 MNX1-AS1:6
5.1 MNX1-AS1:6
5.2 MNX1-AS1:6