Transcript: MYCNOS:11

Basic information

LNCipedia transcript ID: MYCNOS:11 
LNCipedia gene ID: MYCNOS
Location (hg19): chr2:16076387-16081723
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1332 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233718.1|ENST00000420452.1
Alternative gene names: NCYM; N-CYM; MYCN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.9885 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNOS:11 yes no no no

Available literature

  1. Vadie (2015), MYCNOS functions as an antisense RNA regulating MYCN., RNA Biol
  2. Suenaga (2014), NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas., PLoS Genet.
  3. Armstrong (1992), Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc., Cell Growth Differ.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MYCNOS:11
5.0 MYCNOS:11
5.1 MYCNOS:11
5.2 MYCNOS:11