Transcript: MYCNOS:3

Basic information

LNCipedia transcript ID: MYCNOS:3 
LNCipedia gene ID: MYCNOS
RefSeq ID: NR_110230
Location (hg19): chr2:16076387-16081845
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1454 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110230; NR_110230.1
Alternative gene names: NCYM; N-CYM; MYCN-AS1; MYCNOS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9885 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNOS:3 yes no no no

Available literature

  1. Vadie (2015), MYCNOS functions as an antisense RNA regulating MYCN., RNA Biol
  2. Suenaga (2014), NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas., PLoS Genet.
  3. Armstrong (1992), Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc., Cell Growth Differ.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBAS-4:7
4.0 MYCNOS:3
4.1 MYCNOS:3
5.0 MYCNOS:3
5.1 MYCNOS:3
5.2 MYCNOS:3