Transcript: MYCNOS:9

Basic information

LNCipedia transcript ID: MYCNOS:9 
LNCipedia gene ID: MYCNOS
Location (hg19): chr2:16080822-16081806
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 985 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233718.1|MICT00000185140.1
Alternative gene names: NCYM; N-CYM; MYCN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.4285 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNOS:9 yes no no no

Available literature

  1. Vadie (2015), MYCNOS functions as an antisense RNA regulating MYCN., RNA Biol
  2. Suenaga (2014), NCYM, a Cis-antisense gene of MYCN, encodes a de novo evolved protein that inhibits GSK3β resulting in the stabilization of MYCN in human neuroblastomas., PLoS Genet.
  3. Armstrong (1992), Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc., Cell Growth Differ.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MYCNOS:9
5.0 MYCNOS:9
5.1 MYCNOS:9
5.2 MYCNOS:9