Transcript: MYCNUT:1

Basic information

LNCipedia transcript ID: MYCNUT:1 
HGNC Gene Symbol: MYCNUT    
HGNC Full Gene Name: MYCN upstream transcript
Ensembl Gene ID: ENSG00000223850
Ensembl Transcript ID: ENST00000433810
Location (hg19): chr2:16060521-16076139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1039 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002830; ENST00000433810; ENST00000433810.1; AC010145.3-001; OTTHUMT00000323744.1; NONHSAT069300
Alternative gene names: XLOC_001364; linc-MYCN-1; ENSG00000223850; AC010145.3; ENSG00000223850.1; OTTHUMG00000039578.3; MYCNUN; MYCNUT; lncUSMycN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.2445 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MYCNUT:1 no no no no

Available literature

  1. Liu (2014), Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-1:1
3.1 lnc-MYCN-1:1
4.0 MYCNUT:1
4.1 MYCNUT:1
5.0 MYCNUT:1
5.1 MYCNUT:1
5.2 MYCNUT:1