Transcript: N4BP2L2-IT2:1

Basic information

LNCipedia transcript ID: N4BP2L2-IT2:1 
HGNC Gene Symbol: N4BP2L2-IT2    
HGNC Full Gene Name: N4BPL2 intronic transcript 2
Ensembl Gene ID: ENSG00000281026
Ensembl Transcript ID: ENST00000629393
RefSeq ID: NR_026928
Location (hg19): chr13:33078643-33083532
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4890 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT033103; NR_026928; ENST00000629393.1; NR_026928.1
Alternative gene names: ENSG00000281026.1; N4BP2L2-IT2; CG030


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3915 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
N4BP2L2-IT2:1 yes no no no

Available literature

  1. Couch (1996), Generation of an integrated transcription map of the BRCA2 region on chromosome 13q12-q13., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-298P3.4.1-3:1
4.0 N4BP2L2-IT2:1
4.1 N4BP2L2-IT2:1
5.0 N4BP2L2-IT2:1
5.1 N4BP2L2-IT2:1
5.2 N4BP2L2-IT2:1