Transcript: NARF-IT1:3

Basic information

LNCipedia transcript ID: NARF-IT1:3 
HGNC Gene Symbol: NARF-IT1    
HGNC Full Gene Name: NARF intronic transcript 1
Ensembl Gene ID: ENSG00000266236
Ensembl Transcript ID: ENST00000584012
Location (hg19): chr17:80439974-80441264
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 769 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584012.1; NARF-OT1-001; OTTHUMT00000443595.1; NONHSAT056720
Alternative gene names: ENSG00000266236.1; NARF-OT1; OTTHUMG00000178846.1; NARF-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3339 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NARF-IT1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXK2-1:1
4.0 lnc-FOXK2-1:1
4.1 lnc-FOXK2-1:1
5.0 lnc-FOXK2-1:1
5.1 NARF-IT1:2
5.2 NARF-IT1:3