Transcript: NAV2-AS3:1

Basic information

LNCipedia transcript ID: NAV2-AS3:1 
HGNC Gene Symbol: NAV2-AS3    
HGNC Full Gene Name: NAV2 antisense RNA 3
Ensembl Gene ID: ENSG00000254542
Ensembl Transcript ID: ENST00000534036
Location (hg19): chr11:20000245-20002883
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 598 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534036.1; NAV2-AS3-001; OTTHUMT00000394494.1; NONHSAT018355
Alternative gene names: ENSG00000254542.1; NAV2-AS3; OTTHUMG00000167396.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.8501 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NAV2-AS3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DBX1-3:1
4.0 NAV2-AS3:1
4.1 NAV2-AS3:1
5.0 NAV2-AS3:1
5.1 NAV2-AS3:1
5.2 NAV2-AS3:1